Single Cell Analysis Pipelines

These details have not been verified by PyPI

Project links

Homepage

Project description

[!NOTE] We are rewriting CeleScope pipelines using nextflow to achieve better scalability and reproducibility. For a list of available pipelines, see nf-celescope. We recommend using nf-celescope whenever possible.

Introduction

CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

Mirror

If you have problems connecting to github, try: https://gitee.com/singleron-rd/celescope/

Documentation

User guide

Support

Please use the issue tracker for questions and malfunctions.

About

CeleScope is currently developed by Singleron Biotechnologies.

www.singleron.bio

Project details

These details have not been verified by PyPI

Project links

Homepage

Release history Release notifications | RSS feed

This version

2.1.0

Sep 10, 2024

2.0.9

Sep 10, 2024

2.0.8 yanked

Mar 6, 2024

Reason this release was yanked:

data not uploaded

2.0.7

Dec 1, 2023

2.0.6

Nov 16, 2023

2.0.5

Nov 15, 2023

2.0.4

Nov 7, 2023

2.0.3

Oct 31, 2023

2.0.2

Oct 30, 2023

2.0.1

Oct 27, 2023

2.0.0

Oct 26, 2023

2.0.0b0 pre-release

Oct 7, 2023

1.17.0

Aug 11, 2023

1.16.2

Jul 14, 2023

1.16.1 yanked

Jul 7, 2023

Reason this release was yanked:

when using multithreading, the same (barcode, gene) combination in the matrix may have multiple entries.

1.16.0

Jul 5, 2023

1.16.0b0 pre-release

Jun 25, 2023

1.15.2

May 24, 2023

1.15.1

May 22, 2023

1.15.0

Apr 12, 2023

1.14.1

Jan 11, 2023

1.14.0

Dec 21, 2022

1.14.0b0 pre-release

Dec 2, 2022

1.13.0

Oct 28, 2022

1.12.1

Sep 16, 2022

1.12.0

Sep 14, 2022

1.12.0b0 pre-release

Sep 8, 2022

1.11.1

Aug 10, 2022

1.11.0

Jul 7, 2022

1.11.0b1 pre-release

Jul 7, 2022

1.11.0b0 pre-release

Jun 21, 2022

1.10.0

Apr 22, 2022

1.9.0

Apr 1, 2022

1.8.1

Mar 23, 2022

1.8.0

Mar 17, 2022

1.7.2

Feb 11, 2022

1.7.1

Jan 17, 2022

1.7.0 yanked

Dec 28, 2021

Reason this release was yanked:

bug with `mt_gene_list`

1.6.1

Dec 1, 2021

1.6.0 yanked

Nov 30, 2021

Reason this release was yanked:

bug in featureCounts

1.5.2

Nov 4, 2021

1.5.1

Oct 28, 2021

1.5.1b0 pre-release

Oct 12, 2022

1.5.0

Sep 9, 2021

1.4.0

Aug 24, 2021

1.3.2

Jul 9, 2021

1.3.1

Jun 10, 2021

1.3.0

May 28, 2021

1.2.0

May 19, 2021

1.1.9

May 8, 2021

1.1.9b1 pre-release

May 8, 2021

1.1.9b0 pre-release

May 8, 2021

1.1.8

Mar 26, 2021

1.1.8b0 pre-release

Mar 18, 2021

1.1.7

Dec 16, 2020

1.1.7b0 pre-release

Dec 11, 2020

1.1.6

Dec 3, 2020

1.1.6b0 pre-release

Dec 3, 2020

1.1.4

Sep 10, 2020

1.1.3

Aug 28, 2020

1.1.2

Aug 28, 2020

1.1.1

Aug 17, 2020

1.1.0 yanked

Aug 17, 2020

Reason this release was yanked:

unstable

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

celescope-2.1.0.tar.gz (2.6 MB view details)

Uploaded Sep 10, 2024 Source

Built Distribution

celescope-2.1.0-py3-none-any.whl (2.8 MB view details)

Uploaded Sep 10, 2024 Python 3

File details

Details for the file celescope-2.1.0.tar.gz.

File metadata

Download URL: celescope-2.1.0.tar.gz
Upload date: Sep 10, 2024
Size: 2.6 MB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/5.1.1 CPython/3.12.6

File hashes

Hashes for celescope-2.1.0.tar.gz
Algorithm	Hash digest
SHA256	`2d7a54eb04623c80c1aa5970b38ded8d029defc0d92605f22a82dd0b925eb323`
MD5	`22ed2d345fdc5e9f2b2197a33ef8a1f0`
BLAKE2b-256	`14797623b5e6363d01cd7c53db731d557f1759ab9b75a86f37c373107cee12f2`

See more details on using hashes here.

File details

Details for the file celescope-2.1.0-py3-none-any.whl.

File metadata

Download URL: celescope-2.1.0-py3-none-any.whl
Upload date: Sep 10, 2024
Size: 2.8 MB
Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: twine/5.1.1 CPython/3.12.6

File hashes

Hashes for celescope-2.1.0-py3-none-any.whl
Algorithm	Hash digest
SHA256	`83035b2389723d139fe3e404ec5c7476f310a4a68db2a66bb0bf2a9d7c70b967`
MD5	`f16e370e8ed61c71e188a744e6e07955`
BLAKE2b-256	`4319d3bc91fdd5655ac963c5bb6eca7329aef450795fcd9977f3ef870f1578c7`