Introduction

CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

Mirror

If you have problems connecting to github, try: https://gitee.com/singleron-rd/celescope/

Documentation

User guide

Support

For instant technical assistance and deep-dive queries into the CeleScope source code, you can now interact with this NotebookLM.

This notebook has been indexed with the complete CeleScope codebase and documents, allowing you to ask specific questions about command-line arguments, algorithm implementations, or error troubleshooting.

Still need help? If the AI does not resolve your query, please use the GitHub Issue Tracker to report malfunctions or ask further questions.

About

CeleScope is currently developed by Singleron Biotechnologies.

www.singleron.bio

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for zhouyiqi91 from gravatar.com zhouyiqi91

Credits

Author: zhouyiqi

License

MIT License

Requires

Python >=3.6

Classifiers

Report project as malware

Release files for celescope 2.15.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for celescope 2.15.1
File Size Uploaded
celescope-2.15.1.tar.gz 2.1 MB Details

Built distribution (wheel)

Table of built distributions (wheels) for celescope 2.15.1
File Interpreter ABI Platform
celescope-2.15.1-py3-none-any.whl 2.2 MB Python 3 none any Details

Total release size: 4.3 MB

Release files / celescope-2.15.1.tar.gz

Download URL celescope-2.15.1.tar.gz
Size 2.1 MB
Tags Source
SHA-256 checksum
How to use checksums 		64b44d1c4c7223b0a404fd5ca4fa6672187cd3239987cb17a004bc4bf61755b1
BLAKE2b-256 checksum
How to use checksums 		da590380643f9a251990d1564c165c5ad893901f9edddfd60b684efbe3a35915
Upload date
Uploaded using Trusted Publishing?
What is trusted publishing? 		No
Uploaded via twine/7.0.0 CPython/3.13.14

Release files / celescope-2.15.1-py3-none-any.whl

Download URL celescope-2.15.1-py3-none-any.whl
Size 2.2 MB
Tags Python 3
SHA-256 checksum
How to use checksums 		6cc4108e26d9d32ddaed048ca0a2b51ce40a63eb5f7c710159a4e568b87550c9
BLAKE2b-256 checksum
How to use checksums 		99aca66a462d8e92eb62fa975e9a269f13e7f64a2d3b6e504cbc09bf7d7fbdab
Upload date
Uploaded using Trusted Publishing?
What is trusted publishing? 		No
Uploaded via twine/7.0.0 CPython/3.13.14

Release history Release notifications | RSS feed

This release

2.15.1 This release

2 release files

2.15.0

2 release files

2.14.0

2 release files

2.13.0

2 release files

2.12.0

2 release files

Pre-release

2.11.6.dev2

2 release files

2.11.5

2 release files

2.11.4

2 release files

2.11.3

2 release files

2.11.2

2 release files

2.11.1

2 release files

2.11.0

2 release files

2.10.3

2 release files

2.10.2

2 release files

2.10.1

2 release files

2.10.0

2 release files

2.9.0

2 release files

2.8.0

2 release files

2.7.6

2 release files

2.7.5

2 release files

2.7.4

2 release files

2.7.3

2 release files

2.7.2

2 release files

2.7.1

2 release files

2.7.0

2 release files

2.6.1

2 release files

2.6.0

2 release files

2.5.0

2 release files

2.4.0

2 release files

2.3.3

2 release files

2.3.2

2 release files

2.3.1

2 release files

Pre-release

2.3.1.dev0

2 release files

2.3.0

2 release files

Pre-release

2.3.0.dev2

2 release files

Pre-release

2.3.0.dev1

2 release files

Pre-release

2.3.0.dev0

2 release files

2.2.2

2 release files

2.2.1

2 release files

2.2.0

2 release files

Pre-release

2.2.0.dev1

2 release files

Pre-release

2.2.0.dev0

2 release files

2.1.0

2 release files

2.0.9

2 release files

Yanked

2.0.8

2 release files

Yanked reason: data not uploaded

2.0.7

2 release files

2.0.6

2 release files

2.0.5

2 release files

2.0.4

2 release files

2.0.3

2 release files

2.0.2

2 release files

2.0.1

2 release files

2.0.0

2 release files

Pre-release

2.0.0b0

2 release files

1.17.0

2 release files

1.16.2

2 release files

Yanked

1.16.1

2 release files

Yanked reason: when using multithreading, the same (barcode, gene) combination in the matrix may have multiple entries.

1.16.0

2 release files

Pre-release

1.16.0b0

2 release files

1.15.4

2 release files

1.15.3

2 release files

1.15.2

2 release files

1.15.1

2 release files

1.15.0

2 release files

1.14.1

2 release files

1.14.0

2 release files

Pre-release

1.14.0b0

2 release files

1.13.0

2 release files

1.12.1

2 release files

1.12.0

2 release files

Pre-release

1.12.0b0

2 release files

1.11.1

2 release files

1.11.0

2 release files

Pre-release

1.11.0b1

2 release files

Pre-release

1.11.0b0

2 release files

1.10.0

2 release files

1.9.0

2 release files

1.8.1

2 release files

1.8.0

2 release files

1.7.2

2 release files

1.7.1

2 release files

Yanked

1.7.0

2 release files

Yanked reason: bug with `mt_gene_list`

1.6.1

2 release files

Yanked

1.6.0

2 release files

Yanked reason: bug in featureCounts

1.5.2

2 release files

1.5.1

2 release files

Pre-release

1.5.1b0

2 release files

1.5.0

2 release files

1.4.0

2 release files

1.3.2

2 release files

1.3.1

2 release files

1.3.0

2 release files

1.2.0

2 release files

1.1.9

3 release files

Pre-release

1.1.9b1

1 release file

Pre-release

1.1.9b0

1 release file

1.1.8

3 release files

Pre-release

1.1.8b0

3 release files

1.1.7

1 release file

Pre-release

1.1.7b0

1 release file

1.1.6

3 release files

Pre-release

1.1.6b0

1 release file

1.1.4

3 release files

1.1.3

3 release files

1.1.2

1 release file

1.1.1

2 release files

Yanked

1.1.0

2 release files

Yanked reason: unstable

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page