cell-feature-data 1.0.5

A Python package for creating a dataset for the Cell Feature Explorer.

Cell Feature Data

Python Package for Creating and Validating Cell Feature Datasets for Cell Feature Explore

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Documentation

For full documentation, please see the full documentation on Github.

Installation

pip install cell-feature-data

Usage

Create a single dataset or a megaset for the Cell Feature Explore:

Run the following command in your terminal: create-dataset

This command will guide you through the following steps:

1. Specify the Path to the Input File: Supported formats: .csv (with more formats to be added in future releases).
2. Set the Output Directory: Provide a path to save the generated dataset files. If not specified, a new dataset folder will be created in the data directory, named after the input file.
3. Process the input file: The tool will calculate and generate the necessary JSON files based on the input data.
4. Enter Additional Metadata: You will be prompted to add more details about the dataset, which will be used to update the generated JSON files.

Import and use the package within your python scripts:

   from cell_feature_data.bin.create_dataset import main


   # Call the main function
   if __name__ == "__main__":
      main()

Dataset Specification

For more information on the dataset structure and settings, refer to the Full spec documentation