Cell Feature Data

Python Package for Creating and Validating Cell Feature Datasets for Cell Feature Explore

Documentation

For full documentation, please see the full documentation on Github.

Installation

pip install cell-feature-data

Usage

Create a single dataset or a megaset for the Cell Feature Explore:

Run the following command in your terminal: create-dataset

This command will guide you through the following steps:

1. Specify the Path to the Input File: Supported formats: .csv (with more formats to be added in future releases).
2. Set the Output Directory: Provide a path to save the generated dataset files. If not specified, a new dataset folder will be created in the data directory, named after the input file.
3. Process the input file: The tool will calculate and generate the necessary JSON files based on the input data.
4. Enter Additional Metadata: You will be prompted to add more details about the dataset, which will be used to update the generated JSON files.

Import and use the package within your python scripts:

   from cell_feature_data.bin.create_dataset import main


   # Call the main function
   if __name__ == "__main__":
      main()

Dataset Specification

For more information on the dataset structure and settings, refer to the Full spec documentation