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UCSC Cellbrowser, an interactive browser for single cell data. Includes converters and basic pipelines for text files, Seurat, Scanpy and Cellranger.

Project description

The UCSC Cell Browser is an interactive browser for single cell data, like mRNA or ATAC-seq data. You can display dimensionality reductions, navigate them with the mouse or the cursor keys, select cells, color by genes or meta annotations and make many other changes. The main site runs at https://cells.ucsc.edu, but using this package you can also convert data yourself and build a Cell Browser HTML directory that can be served through any University webserver. You can try the Cell Browser at https://cells.ucsc.edu or read about how to convert data with this package on https://cellbrowser.rtfd.org.

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