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UCSC Cellbrowser, an interactive browser for single cell data. Includes converters and basic pipelines for text files, Seurat, Scanpy and Cellranger.

Project description

This is a package with a script that creates a web-based viewer for single cell data. The main script is cbBuild. It accepts an expression matrix and cell annotation (meta data) file. It creates an index.html, various .json and binary data files, copies javascript files into the same directory. The resulting webpage allows to move between datasets and to color the plot by gene or annotation.

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