Web application for exploration of single-cell datasets with lineage tree visualization

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  • License: MIT License (MIT)
  • Author: William Colgan
  • Requires: Python >=3.10
  • Provides-Extra: prepare , annotate
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Project description

An interactive explorer for single-cell lineage tracing.

CELLxLINEAGE is a fork of CELLxGENE extended to support TreeData objects and lineage tree visualization alongside the standard UMAP embedding.

Installation

You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge.

Install the latest release of cellxlineage from PyPI:

pip install cellxlineage

Usage

# Launch with a TreeData file
cellxlineage launch data.h5td

CELLxGENE documentation

CELLxLINEAGE inherits all standard CELLxGENE Annotate features. For documentation on exploration, filtering, differential expression, and annotations, see the CELLxGENE Annotate documentation.

Contact

For questions and bug reports please use the issue tracker.

License

MIT — see LICENSE. Portions copyright Chan Zuckerberg Initiative; lineage extensions copyright William Colgan.

Project details

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  • License: MIT License (MIT)
  • Author: William Colgan
  • Requires: Python >=3.10
  • Provides-Extra: prepare , annotate
Classifiers

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0.1.1

0.1.0

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