An interactive explorer for single-cell lineage tracing.
CELLxLINEAGE is a fork of CELLxGENE extended to support TreeData objects and lineage tree visualization alongside the standard UMAP embedding.
Installation
You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge.
Install the latest release of cellxlineage from PyPI:
pip install cellxlineage
Usage
# Launch with a TreeData file
cellxlineage launch data.h5td
CELLxGENE documentation
CELLxLINEAGE inherits all standard CELLxGENE Annotate features. For documentation on exploration, filtering, differential expression, and annotations, see the CELLxGENE Annotate documentation.
Contact
For questions and bug reports please use the issue tracker.
License
MIT — see LICENSE. Portions copyright Chan Zuckerberg Initiative; lineage extensions copyright William Colgan.
1 maintainer
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