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chemdb-common

Shared library for chemistry database MCP servers. Provides SQLAlchemy models, sync utilities, and CLI tools used by grandmofty-mcp and catapult-mcp.

Features

  • Pydantic models — typed schemas for MOFs, reactions, isotherms
  • SQLAlchemy ORM — SQLite and PostgreSQL support
  • Sync framework — pull data from remote APIs (mofdb-client, Zenodo, Materials Project)
  • CLI — chemdb command for database management

Installation

uv pip install -e .
# With PostgreSQL support:
uv pip install -e ".[postgres]"

Usage

chemdb sync          # sync all data sources
chemdb stats         # show database statistics

Dependencies

  • pydantic — data validation
  • sqlalchemy — ORM
  • typer — CLI framework
  • httpx — HTTP client for API calls

License

LGPL-3.0-or-later — see LICENSE.

Metadata

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