30 projects
acatome-extract
PDF extraction pipeline for scientific papers
acatome-quest-mcp
Paper-request MCP: track, resolve, fetch (OA-only), and flag misconceptions for scientific papers
acatome-meta
Lightweight metadata lookup for scientific papers
precis-mcp
MCP server for structured document access — read, write, search, and annotate DOCX, LaTeX, Markdown, and scientific papers with minimal token usage
acatome-store
Persistent storage, dedup, metadata queries, and semantic search for acatome bundles
patentorney-mcp
MCP server for managing patent application drafts
acatome-lambic
MCP-aware LLM shell with provider switching
acatome-chat
AI research assistant — local Ollama or Claude/GPT-4o, switchable. Paper library, doc editing, web search.
chemdb-common
Shared library for chemistry database MCP servers
slullama
Shared Ollama gateway over Slurm — wake a GPU node on demand
precis-summary
Fast extractive summarization via RAKE keyword extraction
perplexity-sonar-mcp
Tiny MCP server for Perplexity Sonar web search
grandmofty-mcp
MCP server for querying Metal-Organic Framework databases
gripe-mcp
Agent complaint box — one-tool MCP for logging bugs and improvement requests
catapult-mcp
MCP server for querying heterogeneous catalysis databases
wolfravant-mcp
MCP server for Wolfram Alpha computational queries
sortie-mcp
Campaign orchestration MCP server for AI agents — dependency DAGs, parallel fan-out, failure policies
tubescribe-mcp
MCP server for fetching YouTube video transcripts
microweldr
Convert SVG and DXF files to Prusa Core One G-code for plastic welding
bambuuzle
Extract and re-insert gcode from Bambu Lab .gcode.3mf files
tome-mcp
DEPRECATED — use precis-mcp instead. Final release.
acatome-mcp
MCP server exposing acatome-store tools
scixtract
AI-assisted scientific PDF text extraction using local Ollama models
phagetrix
Optimizer for degenerate codon use in phage library generation
optunacy
Optunacy is a contour plot generator for Optuna studies.
cmdrnafold
Primitive Vienna RNA fold interface via the commandline.
wibble
Minimal python project that exposes a commandline feature
bfasta
Simple fasta reader with no dependencies
phronesitron
Interact with ML language models from the commandline
paper2txt
Simple tool to extract text from scientific PDFs
