ChipStream is a graphical user interface for postprocessing deformability cytometry (DC) data. This includes background computation, event segmentation, and feature extraction.
Documentation
The documentation, is available at chipstream.readthedocs.io.
Installation
Installers for Windows and macOS are available at the release page. The documentation/install section explains how you can install ChipStream via pip, including extras and caveats.
Execution
If you have installed ChipStream from PyPI, you can start it with
# graphical user interface chipstream-gui # command-line interface chipstream-cli
Citing ChipStream
Please cite ChipStream either in-line
(...) using the postprocessing software ChipStream version X.X.X (available at https://github.com/DC-analysis/ChipStream).
or in a bibliography
Paul Müller and others (2023), ChipStream version X.X.X: Postprocessing software for deformability cytometry [Software]. Available at https://github.com/DC-analysis/ChipStream.
and replace X.X.X with the version of ChipStream that you used.
Testing
pip install -e . pip install -r tests/requirements.txt pytest tests
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