chromosome-ideogram 0.0.1

A python package for drawing genome-wide data on idiograms.

ChromosomeIdeogram

A python package for drawing genome-wide data on ideograms.

Install

pip install chromosome-ideogram

Usage example

import matplotlib.pyplot as plt
from chromosome_ideogram import ChromosomeIdeogram

plt.rcParams['font.size'] = 8

fig = plt.figure(figsize=(10, 7))
axes = fig.add_subplot(111)

ci = ChromosomeIdeogram(
    karyotype='example/karyotype.xls',
    radius=0.4,  # Radius of chromosome (it is not recommended to make any changes)
    space=3  # Chromosome center coordinate interval (radius x space, also not recommended for modification)
)
ci.draw_chromh(axes=axes, centromere_angle=60, color='lightgrey')
ci.annotations(axes=axes, annotations='example/satellite_DNA.bed')

plt.savefig('example/satellite_DNA.pdf', bbox_inches='tight')
plt.savefig('example/satellite_DNA.png', bbox_inches='tight')