Skip to main content

CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data

Project description

CluBCpG: Cluster-Based analysis of CpG methylation

Build Status Documentation Status Language grade: Python

What is CluBCpG?

CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data. This toolkit will divide each chromosome into small user-defined intervals, extract all WGBS reads within those intervals, cluster them based on identity, and write a final report to the use containing all identified CpG methylation patterns.

How do I use this?

Full documentation is available on ReadTheDocs

Requirements

  • Python >= 3.5
  • Installation of Samtools on your PATH

Install

  • (Optional, but HIGHLY recommended) Create a new python virtual environment and activate that virualenv
  • Execute pip install clubcpg to install the package. Requirements will automatically be installed if not already present.

Help! This isnt working.

Open an Issue

Can you make it do this?

Open a Feature Request

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for clubcpg, version 0.2.4
Filename, size File type Python version Upload date Hashes
Filename, size clubcpg-0.2.4-py3-none-any.whl (33.4 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size clubcpg-0.2.4.tar.gz (23.7 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page