Skip to main content

CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data

Project description

CluBCpG: Cluster-Based analysis of CpG methylation

Build Status Documentation Status Language grade: Python

What is CluBCpG?

CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data. This toolkit will divide each chromosome into small user-defined intervals, extract all WGBS reads within those intervals, cluster them based on identity, and write a final report to the use containing all identified CpG methylation patterns.

How do I use this?

Full documentation is available on ReadTheDocs


  • Python >= 3.5
  • Installation of Samtools on your PATH


  • (Optional, but HIGHLY recommended) Create a new python virtual environment and activate that virualenv
  • Execute pip install clubcpg to install the package. Requirements will automatically be installed if not already present.

Help! This isnt working.

Open an Issue

Can you make it do this?

Open a Feature Request

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for clubcpg, version 0.1.22
Filename, size File type Python version Upload date Hashes
Filename, size clubcpg-0.1.22-py3-none-any.whl (33.1 kB) File type Wheel Python version py3 Upload date Hashes View hashes
Filename, size clubcpg-0.1.22.tar.gz (23.3 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page