CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data
Project description
CluBCpG: Cluster-Based analysis of CpG methylation
What is CluBCpG?
CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data. This toolkit will divide each chromosome into small user-defined intervals, extract all WGBS reads within those intervals, cluster them based on identity, and write a final report to the use containing all identified CpG methylation patterns.
How do I use this?
Full documentation is available on ReadTheDocs
Requirements
- Python >= 3.5
- Installation of Samtools on your PATH
Install
- (Optional, but HIGHLY recommended) Create a new python virtual environment and activate that virualenv
- Execute
pip install clubcpgto install the package. Requirements will automatically be installed if not already present.
Help! This isnt working.
Open an Issue
Can you make it do this?
Open a Feature Request
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file clubcpg-0.1.18.tar.gz.
File metadata
- Download URL: clubcpg-0.1.18.tar.gz
- Upload date:
- Size: 24.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.6.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
f2c15c361bb5bc462b16f45e5093774209a5bb3699d5b694ddc20a7f42116835
|
|
| MD5 |
1be075ce8e8799ba4db8afb5afe77700
|
|
| BLAKE2b-256 |
21cb677ef94fd9ae77e452c6738effc534f9e61d33a56b3c71a00dfd347746c8
|
File details
Details for the file clubcpg-0.1.18-py3-none-any.whl.
File metadata
- Download URL: clubcpg-0.1.18-py3-none-any.whl
- Upload date:
- Size: 32.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.6.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
75db364f6219b0a71d1d338a8307c862bc06f94778fd8a3e5b2e071819b396df
|
|
| MD5 |
7f7e24be38f308a6c512d8908d903991
|
|
| BLAKE2b-256 |
9f4e5ecfd4a7a9a2425be805c8c46d8e1d29cf7e1eb080aa6431ce47733454d7
|
