compartmentModel 1.3

A command line utility to estimate parameters for Compartment Model. For more details see documentation and Dutta et al, Gen Res, 2023.

Polcomp: compartment model as a command-line interface

A command line utility to estimate parameters for Compartment Model. For more details, please refer to documentation and Dutta et al, Gen Res, 2023

Direct install: pip install compartmentModel.

Installation steps (virtual environment venv not needed but recommended):

• cd /path/to/your/directory
• python3 -m venv compModelEnv ## create your environment
• source compModelEnv/bin/activate ## activate your environment
• python3 -m pip install compartmentModel ## can directly install this without venv steps above

Quick start/user guide:

Vignette: https://guertinlab.github.io/compartment_model/compModel_vignette/compartmentModel_vignette.html

Package: https://pypi.org/project/compartmentModel/

Package building (in case you are downloading/cloning the entire package source files):

• python3 -m pip install build
• python3 -m build
• python3 -m pip install twine
• python3 -m twine check dist/*
• python3 -m twine upload -r pypi dist/*