compartmentModel 1.121

A command line utility to estimate parameters for Compartment Model. For more details see documentation and Dutta et al, Gen Res, 2023.

Polcomp: compartment model as a command-line interface

A command line utility to estimate parameters for Compartment Model. For more details, please refer to documentation and Dutta et al, Gen Res, 2023

Installation steps (virtual environment venv not needed but recommended):

• cd /path/to/your/directory
• python3 -m venv myenv ## create your environment
• source myenv/bin/activate ## activate your environment
• python3 -m pip install compartmentModel ## can directly install this without venv steps above

Quick start/user guide:

Vignette: https://guertinlab.github.io/compartment_model/compModel_vignette/compModel_vignette/compartmentModel_vignette.html

Package: https://pypi.org/project/compartmentModel/

Package building (in case you are downloading/cloning the entire package source files):

• python3 -m pip install build
• python3 -m build
• python3 -m pip install twine
• python3 -m twine check dist/*
• python3 -m twine upload -r pypi dist/*