Skip to main content

A Python Interface to Contact Predictions

DOI Status PyPi Package Python Versions Documentation Status Build Status

NEW: Now ConKit is also compatible with residue-residue distance predictions

ConKit is a Python library to provide a data object hierarchy and associated routine operations to work and manipulate residue-residue contact prediction data. Main features shipped with this library include:

  • Parsers for Multiple Sequence Alignment, contact prediction and residue distance prediction files

  • Analysis functions for Multiple Sequence Alignment, contact prediction data and residue distance prediction data

  • Visualisation of Multiple Sequence Alignment, contact prediction data and residue distance prediction data

  • Validation of models based on residue distance predictions

  • Python wrappers for the contact-prediction-related software

For a general overview of ConKit, watch this video.

For an overview of model validation with ConKit, watch this video.

Installation & Usage

Please refer to ConKit’s documentation.

Contributing

There are two ways by which you can contribute to ConKit:

  1. Submit any suggestions to the GitHub Issue Tracker, or

  2. Fork this repository, commit your changes and submit a pull request.

Found a Bug?

Please use the GitHub Issue Tracker.

Release files for conkit 0.13.3

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for conkit 0.13.3
File Size Uploaded
conkit-0.13.3.tar.gz 171.9 kB Details

Release files / conkit-0.13.3.tar.gz

Download URL conkit-0.13.3.tar.gz
Size 171.9 kB
Tags Source
SHA-256 checksum
How to use checksums
c4950b786010ece7da0d226909f24115bad50dc92f8aa1d0544a28dad7f061c3
BLAKE2b-256 checksum
How to use checksums
8abdae37b6cb0254df6ec905d1381b55a58c652df542b3ef99c254f99ec48531
Upload date
Uploaded using Trusted Publishing?
What is trusted publishing?
No
Uploaded via twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.25.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.64.0 importlib-metadata/4.10.1 keyring/22.0.1 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.12

Release history Release notifications | RSS feed

This release

0.13.3 This release

1 release file

0.13.2

1 release file

0.13.1

1 release file

0.13.0

1 release file

0.12.0

1 release file

0.11.3

1 release file

0.11.2

1 release file

0.11.1

1 release file

0.10.2

1 release file

0.10.1

1 release file

0.10.0

1 release file

0.9.0

1 release file

0.8.4

1 release file

0.8.3

1 release file

0.8.2

1 release file

0.8.1

1 release file

0.8

1 release file

0.7

1 release file

0.6.3

1 release file

0.6.1

1 release file

0.6

1 release file

0.5

1 release file

0.4

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page