CUDA-accelerated CRISPR off-target search
Project description
crispr
CUDA-accelerated CRISPR off-target search with MIT/CFD scoring. Includes a C++ core, CUDA kernels, CLI, and Python bindings.
Features:
- GPU/CPU parity for Hamming, MIT, CFD scoring (configurable via JSON tables).
- Build/load genome indexes; score guides with NGG/SpCas9 (20nt) v0.1.0 scope.
- CLI (
crispr-gpu) and Python API (import crispr_gpu as cg).
Install:
pip install crispr
Source/build: see https://github.com/omniscoder/crispr-gpu
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