Particle Picking of Cryo-EM Datasets
Project description
Multi-Particle Cryo-EM
This package is intended to function as the repository for data wrangling and analysis.
This package can use both CPUs and GPUs because of JAX.
Additionally, the package organization assumes that a POSIX compliant system is present (Linux or MacOS). Ideally you should be running this in a Linux environment.
Pre-Installation
These are directions on how to get your python environment ready for installation
Pyenv pre-installation
To get ready for installing the first time using venv:
git git@code.ornl.gov:intersect-em/particle_finding.git
cd particle_finding
python -m venv env
source env/bin/activate
This prepares your python environment for installation in the next steps
Conda pre-installation
To install for the first time using conda:
conda create -n arm python==3.10
git clone git@code.ornl.gov:arm-inititative/multi-particle-cryoem.git
cd multi-particle-cryoem
Installation
After pre-installation, these are the directions to install the cryoblob package.
pip install -e .
Package Organization
- The codes are located in /src/cryoblob/
- The notebooks are located in /tutorials/
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file cryoblob-2025.4.5.tar.gz.
File metadata
- Download URL: cryoblob-2025.4.5.tar.gz
- Upload date:
- Size: 23.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.12.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
f006fe57eea4746525d46a9b066d6b1e39a62082e99bf4d7e25eb8ffb6faa18a
|
|
| MD5 |
cece6ffd495fd1c14064c98ff98908f4
|
|
| BLAKE2b-256 |
b3da39b836bf173b92de57b1f40a9fe5785d6f7a2a8ea60e3a7fef87e70f527a
|
File details
Details for the file cryoblob-2025.4.5-py3-none-any.whl.
File metadata
- Download URL: cryoblob-2025.4.5-py3-none-any.whl
- Upload date:
- Size: 21.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.12.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
4ebb118161414355888f1950072b278f1c4166c3ce3137e40bdbd65589a7d2f5
|
|
| MD5 |
13c5d50fee0f32ba5ecb5698002e4734
|
|
| BLAKE2b-256 |
142316a71838fb3499cef16467817124a188cfc082877ea1ce5abecdcbcf828c
|
