Particle Picking of Cryo-EM Datasets
Project description
Multi-Particle Cryo-EM
This package is intended to function as the repository for data wrangling and analysis.
This package can use both CPUs and GPUs because of JAX.
Pre-Installation
These are directions on how to get your python environment ready for installation
Pyenv pre-installation
To get ready for installing the first time using venv:
git git@code.ornl.gov:intersect-em/particle_finding.git
cd particle_finding
python -m venv env
source env/bin/activate
This prepares your python environment for installation in the next steps
Conda pre-installation
To install for the first time using conda:
conda create -n arm python==3.10
git clone git@code.ornl.gov:arm-inititative/multi-particle-cryoem.git
cd multi-particle-cryoem
Installation
After pre-installation, these are the directions to install the cryoblob package.
pip install -e .
Package Organization
- The codes are located in /src/cryoblob/
- The notebooks are located in /tutorials/
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