cs_dmri
Python interface to cs_dmri, a Rust library for the analysis of diffusion MRI data: image quality control, 3D-SHORE reconstruction, robust diffusion tensor estimation (RESTORE) and single-shell three-tissue constrained spherical deconvolution.
pip install cs_dmri
import cs_dmri as cs
dwi = cs.DWI.from_files("dwi.nii.gz", "dwi.bval", "dwi.bvec", mask="mask.nii.gz")
qc = dwi.qc() # image-quality metrics
qc.to_dict() # one row of a QC table
cs.QCReport.column_descriptions() # its data dictionary
tensor = cs.RestoreModel(dwi.gtab).fit(dwi) # FA, MD, S0, principal direction
shore = cs.ShoreModel(dwi.gtab).fit(dwi) # 3D-SHORE coefficients and diagnostics
ss3t = cs.ss3t_pipeline(dwi) # single-shell three-tissue CSD
ss3t.export("ss3t.odx") # ODX; also .fz, .fib.gz, .pam5, .mif
Documentation: https://cs-dmri.readthedocs.io
License: (MIT OR Apache-2.0) AND MPL-2.0 AND BSD-3-Clause; see the
documentation for details.
1 maintainer
Metadata
1 maintainer
Release files for cs-dmri 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cs_dmri-0.1.0.tar.gz | 691.0 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| cs_dmri-0.1.0-cp39-abi3-win_amd64.whl | CPython 3.9 | abi3 | Windows x86-64 | Details |
| cs_dmri-0.1.0-cp39-abi3-musllinux_1_2_x86_64.whl | CPython 3.9 | abi3 | Linux musl 1.2+ x86-64 | Details |
| cs_dmri-0.1.0-cp39-abi3-musllinux_1_2_aarch64.whl | CPython 3.9 | abi3 | Linux musl 1.2+ ARM64 | Details |
| cs_dmri-0.1.0-cp39-abi3-manylinux_2_28_x86_64.whl | CPython 3.9 | abi3 | Linux glibc 2.28+ x86-64 | Details |
| cs_dmri-0.1.0-cp39-abi3-manylinux_2_28_aarch64.whl | CPython 3.9 | abi3 | Linux glibc 2.28+ ARM64 | Details |
| cs_dmri-0.1.0-cp39-abi3-macosx_11_0_arm64.whl | CPython 3.9 | abi3 | macOS 11.0+ ARM64 | Details |
| cs_dmri-0.1.0-cp39-abi3-macosx_10_12_x86_64.whl | CPython 3.9 | abi3 | macOS 10.12+ x86-64 | Details |
Total release size: 23.9 MB
Release files / cs_dmri-0.1.0.tar.gz
| Download URL | cs_dmri-0.1.0.tar.gz |
|---|---|
| Size | 691.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
8dcb5a9ca28fd2fd66f14a6fe692a9de35b3df9a4bb64505604cc6bc9557007b
|
|
BLAKE2b-256 checksum How to use checksums |
c0ce9d3fe9c861542fca4576a252bf19896c10fe8066986397305d05ea174a25
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency logRelease files / cs_dmri-0.1.0-cp39-abi3-win_amd64.whl
| Download URL | cs_dmri-0.1.0-cp39-abi3-win_amd64.whl |
|---|---|
| Size | 4.6 MB |
| Tags | CPython 3.9 Windows x86-64 abi3 |
|
SHA-256 checksum How to use checksums |
ec2a05a2aac1b680db9aa4b15d090b2964272c54df1e58e24c7da527e8938927
|
|
BLAKE2b-256 checksum How to use checksums |
58a5de690350b45b8a4c46d4b7cb6b35bf348ef4e3dae122ae40754451e005a6
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency logRelease files / cs_dmri-0.1.0-cp39-abi3-musllinux_1_2_x86_64.whl
| Download URL | cs_dmri-0.1.0-cp39-abi3-musllinux_1_2_x86_64.whl |
|---|---|
| Size | 3.5 MB |
| Tags | CPython 3.9 Linux musl 1.2+ x86-64 abi3 |
|
SHA-256 checksum How to use checksums |
fb847c676f8efa13c13bb78f62ebeee65dbff3c0af3c679f1b42a0f1896a90ff
|
|
BLAKE2b-256 checksum How to use checksums |
b965702cb642916912a55721eed402427bbb8a79adc316a984da3991c41079b9
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency logRelease files / cs_dmri-0.1.0-cp39-abi3-musllinux_1_2_aarch64.whl
| Download URL | cs_dmri-0.1.0-cp39-abi3-musllinux_1_2_aarch64.whl |
|---|---|
| Size | 3.3 MB |
| Tags | CPython 3.9 Linux musl 1.2+ ARM64 abi3 |
|
SHA-256 checksum How to use checksums |
43895462d805b96d855bc82ed1aa5d15093ad1e992a6e9b3e8c6d107ed059899
|
|
BLAKE2b-256 checksum How to use checksums |
383d2966063f88b741476c293ac2e23bddda162b5340afe795c7eba981808339
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency logRelease files / cs_dmri-0.1.0-cp39-abi3-manylinux_2_28_x86_64.whl
| Download URL | cs_dmri-0.1.0-cp39-abi3-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 3.3 MB |
| Tags | CPython 3.9 Linux glibc 2.28+ x86-64 abi3 |
|
SHA-256 checksum How to use checksums |
d82d0feb82b8622b82770344b2aef8b48104c17d4ef4d14b2b7b8c6df56d330d
|
|
BLAKE2b-256 checksum How to use checksums |
cb0322c7d5d67da1e23198bca0a90c97641c69fe8d693642b6670558bb1b09b0
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency logRelease files / cs_dmri-0.1.0-cp39-abi3-manylinux_2_28_aarch64.whl
| Download URL | cs_dmri-0.1.0-cp39-abi3-manylinux_2_28_aarch64.whl |
|---|---|
| Size | 3.0 MB |
| Tags | CPython 3.9 Linux glibc 2.28+ ARM64 abi3 |
|
SHA-256 checksum How to use checksums |
12007a7a6d4f406eb6d9fc25c5cbd7fc1a7d16a9c9d37126e8ef2b7a620024af
|
|
BLAKE2b-256 checksum How to use checksums |
1374f8c619410978b9fa96ddba2faf06126ef15634fd39f92bab1ccbc4a4fc11
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency logRelease files / cs_dmri-0.1.0-cp39-abi3-macosx_11_0_arm64.whl
| Download URL | cs_dmri-0.1.0-cp39-abi3-macosx_11_0_arm64.whl |
|---|---|
| Size | 2.6 MB |
| Tags | CPython 3.9 abi3 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
48fedd844cc60d51aa06e626969c9f625002b605e7d15d3acd03c45be9d93b36
|
|
BLAKE2b-256 checksum How to use checksums |
f95043af021291406d1f32bfca0024e72ffc6afeb3a5dca903f2c2fb3004ef95
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency logRelease files / cs_dmri-0.1.0-cp39-abi3-macosx_10_12_x86_64.whl
| Download URL | cs_dmri-0.1.0-cp39-abi3-macosx_10_12_x86_64.whl |
|---|---|
| Size | 2.9 MB |
| Tags | CPython 3.9 abi3 macOS 10.12+ x86-64 |
|
SHA-256 checksum How to use checksums |
0fbaa90bc422f399b28e9c2cc9f39a9a7af691d5c5194a98680005378dc69adc
|
|
BLAKE2b-256 checksum How to use checksums |
0d3415f198113f5cf94c1ad5caf35f8c4e15a565c6d0b686091a8723dc95e454
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 9, 2026.
Transparency log
