Python interface to access data from The Comparative Toxicogenomics Database (CTD)
Project description
CTD Python
Pyhton interface to access data from The Comparative Toxicogenomics Database (CTD)
install
pip3 install ctd-python
import the package in order to pull the data
from ctd import get_data
The package offers the following resources as DataFrames
- GeneInteractionTypes
- ChemicalPathwaysEnriched
- GeneDisease
- GenePathways
- DiseasePathways
- ChemocalPhenoTypeInteractions
- Chemicals
- Genes
- ChemicalGeneInteractions
- Chemicals
- Diseases
Get the Gene Information for TNF
gene_df = get_data('Genes')
tnf_df = gene_df[gene_df['GeneSymbol'] == 'TNF']
Get Chemical Interactions for TNF
chem_gene_df = get_data('ChemicalGeneInteractions')
tnf_chem_df = chem_gene_df[chem_gene_df['GeneSymbol'] == 'TNF']
Get Disease Hierarchy for Parkinson Disease
child_diseases = get_disease_hierarchy('MESH:D010300')
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