PyPI: 
Conda: 
This is a testing tool for checking the output of Tools and Workflows described with the Common Workflow Language. Among other uses, it is used to run the CWL conformance tests.
This is written and tested for Python 3.6, 3.7, 3.8, and 3.9
Install
Installing the official package from PyPi
pip install cwltestOr from bioconda
conda install -c bioconda cwltestOr from source
git clone https://github.com/common-workflow-language/cwltest.git
cd cwltest && python setup.py installRun on the command line
Simple command:
cwltest --test test-descriptions.yml --tool cwl-runner
Generate conformance badges using cwltest
To make badges that show the results of the conformance test, you can generate JSON files for https://badgen.net by using –badgedir option
To generate JSON files:
cwltest --test test-descriptions.yml --tool cwl-runner --badgedir badges
...
$ cat badges/command_line_tool.json | jq .
{
"subject": "command_line_tool",
"status": "100%",
"color": "green"
}
Once you upload JSON file to a server, you make a badge by using a link like https://badgen.net/https/path/to/generated/json or https://flat.badgen.net/https/path/to/generated/json (for flat badges).
Here is an example of markdown to add a badge:
Metadata
Release files for cwltest 2.2.20211116163652
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cwltest-2.2.20211116163652.tar.gz | 58.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| cwltest-2.2.20211116163652-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 82.1 kB
Release files / cwltest-2.2.20211116163652.tar.gz
| Download URL | cwltest-2.2.20211116163652.tar.gz |
|---|---|
| Size | 58.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.8
|
Release files / cwltest-2.2.20211116163652-py3-none-any.whl
| Download URL | cwltest-2.2.20211116163652-py3-none-any.whl |
|---|---|
| Size | 23.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.8
|
