Common Workflow Language testing framework

PyPI:

Conda:

This is a testing tool for checking the output of Tools and Workflows described with the Common Workflow Language. Among other uses, it is used to run the CWL conformance tests.

This is written and tested for Python 3.8, 3.9, 3.10, 3.11, and 3.12.

Install

Installing the official package from PyPi

pip install cwltest

Or from bioconda

conda install -c bioconda cwltest

Or from source

git clone https://github.com/common-workflow-language/cwltest.git
cd cwltest && python setup.py install

Run on the command line

Simple command:

cwltest --test test-descriptions.yml --tool cwl-runner

Generate conformance badges using cwltest

To make badges that show the results of the conformance test, you can generate JSON files for https://badgen.net by using –badgedir option

To generate JSON files:

cwltest --test test-descriptions.yml --tool cwl-runner --badgedir badges
...
$ cat badges/command_line_tool.json | jq .
{
  "subject": "command_line_tool",
  "status": "100%",
  "color": "green"
}

Once you upload JSON file to a server, you make a badge by using a link like https://badgen.net/https/path/to/generated/json or https://flat.badgen.net/https/path/to/generated/json (for flat badges).

Here is an example of markdown to add a badge:

![test result](https://flat.badgen.net/https/path/to/generated/json?icon=commonwl)

Metadata

Release files for cwltest 2.4.20231031143732

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for cwltest 2.4.20231031143732
File	Size	Uploaded
cwltest-2.4.20231031143732.tar.gz	67.7 kB	Oct 31, 2023	Details

Built distribution (wheel)

Table of built distributions (wheels) for cwltest 2.4.20231031143732
File	Interpreter	ABI	Platform	Reset
cwltest-2.4.20231031143732-py3-none-any.whl 40.5 kB Oct 31, 2023	Python 3	none	any	Details

Total release size: 108.2 kB

Release files / cwltest-2.4.20231031143732.tar.gz

Download URL	cwltest-2.4.20231031143732.tar.gz
Size	67.7 kB
Tags	Source
SHA-256 checksum How to use checksums	`cbc51a974fc488d9057dd0d97fbf8c94a339944a4268db4610423d15d3683ed1`
BLAKE2b-256 checksum How to use checksums	`dfabe3d322a699b81876d89e45942420338610cefa93e2818f5adc72152f358b`
Upload date	Oct 31, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.11.2`

Release files / cwltest-2.4.20231031143732-py3-none-any.whl

Download URL	cwltest-2.4.20231031143732-py3-none-any.whl
Size	40.5 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`15fd227d39b825154275ccc0e0a9598ef46bb7ba05cda15cde40e164f36b797f`
BLAKE2b-256 checksum How to use checksums	`54ebdfe0057335d4fd382394c4757ed618885c269546bf0c44be8c186fb9cc41`
Upload date	Oct 31, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.11.2`