Plugin for traditional moire pattern analysis of microtubules
Project description
cylindra-moire-analysis
A cylindra plugin for traditional moiré pattern analysis of microtubules.
This plugin was generated with cookiecutter.
Installation
pip install cylindra-moire-analysis
Usage
After running spline fitting and global-CFT analysis, you can analyze the moiré patterns for each splines.
-
Automatic skew angle measurement. From "Plugins > Moire pattern analysis > Measure skew ...", the traditional skew angle will be automatically determined from the moiré pattern, printed in the logger and stored as
"moire_skew_angle"global property of each spline. -
Export images for TubuleJ analysis. From "Plugins > Moire pattern analysis > Export for TubuleJ ...", the straightened and filtered images along with the calibration file will be exported. The exported directory can be directly opened in TubuleJ for further manual analysis.
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