cytozip: Chunk based ZIP for cytosine data
Project description
Cytozip: Chunk based ZIP for cytosine data
Installation
pip install cytozip
#or
pip install git+http://github.com/DingWB/cytozip
reinstall
pip uninstall -y cytozip && pip install git+http://github.com/DingWB/cytozip
Implementation
| allcools | ballcools | cytozip | |
|---|---|---|---|
| Format | .tsv.gz | .ballc | .cz |
| Compression algorithm | bgzip | bgzip | cytozip |
| Support Random Access ? | Yes | Yes | Yes |
| Need extra index file for query? | Yes | yes | No |
| Quickly Merge? | No | No | Yes |
Usage
Example dataset
https://figshare.com/articles/dataset/czip_example_data/25374073
dev
python setup.py build_ext --inplace
Release history Release notifications | RSS feed
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Source Distribution
cytozip-0.2.tar.gz
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