dandi 0.75.0

Command line client for interaction with DANDI instances

DANDI Client

The DANDI Python client allows you to:

• Download Dandisets and individual subject folders or files
• Validate data to locally conform to standards
• Organize your data locally before upload
• Upload Dandisets
• Interact with the DANDI instance's web API from Python
• Delete data in the DANDI instance
• Perform other auxiliary operations with data on the DANDI instance

Note: This project is under active development. See the issues log or Work-in-Progress (WiP).

Installation

DANDI Client releases are available from PyPI and conda-forge. Install them in your Python (native, virtualenv, or conda) environment via

pip install dandi

or

conda install -c conda-forge dandi

CLI Tool

This package provides a command line utility with a basic interface to help you prepare and upload your data to, or obtain data from, a DANDI instance such as the DANDI Archive.

$> dandi
Usage: dandi [OPTIONS] COMMAND [ARGS]...

  A client to support interactions with DANDI instances, such as the DANDI
  Archive (http://dandiarchive.org).

  To see help for a specific command, run

      dandi COMMAND --help

  e.g. dandi upload --help

Options:
  --version
  -l, --log-level [DEBUG|INFO|WARNING|ERROR|CRITICAL]
                                  Log level (case insensitive).  May be
                                  specified as an integer.  [default: INFO]
  --pdb                           Fall into pdb if errors out
  --help                          Show this message and exit.

Commands:
  delete            Delete dandisets and assets from the server.
  digest            Calculate file digests
  download          Download files or entire folders from DANDI.
  instances         List known DANDI instances that the CLI can interact...
  ls                List .nwb files and dandisets metadata.
  move              Move or rename assets in a local Dandiset and/or on...
  organize          (Re)organize NWB files according to their metadata.
  service-scripts   Various utility operations
  shell-completion  Emit shell script for enabling command completion.
  upload            Upload Dandiset files to DANDI Archive.
  validate          Validate files for data standards compliance.
  validate-bids     Validate BIDS paths.

Run dandi --help or dandi <subcommand> --help (e.g. dandi upload --help) to see manual pages.

Resources

• To learn how to interact with the DANDI Archive and for examples on how to use the DANDI Client in various use cases, see the DANDI Docs (specifically the sections on using the CLI to download and upload Dandisets).

• To get help:

  • ask a question: https://github.com/dandi/helpdesk/discussions
  • file a feature request or bug report: https://github.com/dandi/helpdesk/issues/new/choose
  • contact the DANDI team: [e-mail]

• To understand how to contribute to the dandi-cli repository, see the DEVELOPMENT.md file.