Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes
Versatile NGS demultiplexer with the following features:
Support for FASTA and FASTQ files.
Support for gzip and bzip2 compressed files.
Support for multiple reads per fragment, e.g., paired-end.
Handles barcodes in the header and in the reads.
Handles barcodes at unknown locations in reads (e.g., PacBio or Nanopore barcodes).
Support for selection of part of a barcode.
Allows for mismatches, insertions and deletions.
Barcode guessing by frequency or fixed amount.
Handles large numbers (over one million) of barcodes.
Please see ReadTheDocs for the latest documentation.
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