Skip to main content

Simple dF/F calculation for neural calcium traces

Project description

dff_calc
========

.. image:: https://img.shields.io/pypi/v/dff_calc.svg
:target: https://pypi.python.org/pypi/dff_calc
:alt: Latest PyPI version

.. image:: https://travis-ci.org.png
:target: https://travis-ci.org
:alt: Latest Travis CI build status

Simple dF/F calculation for neural calcium traces, based on https://www.nature.com/articles/nprot.2010.169

Usage
-----
1. ``from dff_calc.df_f_calculation import DffCalculator``
2. Create an instance with an two-dimensional array, the rows being individual traces. Other parameters are
documented in the code.
3. Call ``.calc()`` on that instance. The returned array contains the calculated dF/F values.

Installation
------------
``pip install dff-calc``

Requirements
^^^^^^^^^^^^
Python 3.6+, `numpy`, `pandas`, `attrs`

Licence
-------

MIT

Authors
-------

`dff_calc` was written by `Hagai Har-Gil <hagaihargil@protonmail.com>`_, graduate student in `Dr. Pablo Blinder's Lab. <pblab.tau.ac.il/en>`_


Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

dff_calc-0.1.5.tar.gz (2.9 kB view details)

Uploaded Source

Built Distribution

dff_calc-0.1.5-py3-none-any.whl (7.5 kB view details)

Uploaded Python 3

File details

Details for the file dff_calc-0.1.5.tar.gz.

File metadata

  • Download URL: dff_calc-0.1.5.tar.gz
  • Upload date:
  • Size: 2.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.8

File hashes

Hashes for dff_calc-0.1.5.tar.gz
Algorithm Hash digest
SHA256 6d86eb18a1b6e1cee9781818dad2cd438a0b2a1c1daebda5aa5a1383a6a2b928
MD5 068343bb1407bcb2b58735945c2e4ea9
BLAKE2b-256 0249f1be50b18052e15caee35efeb1b0b1e0e108a8572b7591a2e1b08c050e82

See more details on using hashes here.

File details

Details for the file dff_calc-0.1.5-py3-none-any.whl.

File metadata

  • Download URL: dff_calc-0.1.5-py3-none-any.whl
  • Upload date:
  • Size: 7.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.8

File hashes

Hashes for dff_calc-0.1.5-py3-none-any.whl
Algorithm Hash digest
SHA256 6a82512ed7580cf0d441e952daf8094f40881570dd3f6d601cca56611d3f49f2
MD5 cf6af603eaf20fbe2d4a7bfb7e5f63d5
BLAKE2b-256 62382c43d9370d5486bb6064b4eeec1fd17de52efa659f3ff71c58ceaf914936

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page