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Streamlit annotation tool for Digital Registrar pathology reports.

Project description

digital-registrar-annotator

Streamlit annotation tool for Digital Registrar pathology reports. Lets clinicians review and correct pipeline pre-annotations against the gold schema.

Install

pip install digital-registrar-annotator

# Workspace mode (with/without pre-annotations subdirs):
registrar-annotate-workspace

# Dummy mode (for trying without real data):
registrar-annotate-dummy

# Legacy flat layout:
registrar-annotate

Default port: 8500.

Folder layouts

  • Canonical (workspace / dummy): {base}/with_preann/{dataset}/{dataset,result}/ and {base}/without_preann/{dataset}/dataset/.
  • Legacy flat: {base}/{prefix}_dataset_{date}/, {prefix}_result_{date}/, {prefix}_annotation_{date}/.

The annotator reads pre-generated JSON schemas from the installed digital_registrar.schemas.data package. No DSPy / LLM dependency.

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