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A simple API (build on top of the Django Model API) to store and manage MIP (molecular inversion probe) markers.

Project description

A simple API (build on top of the Django Model API) to store and manage MIP (molecular inversion probe) markers. Detailed markers description e.g in [Science 338, 1619 (2012)].

Prerequisites

#### Python 2.7

Linux

probably, you already have it!

Windows

download & install: https://www.python.org/ftp/python/2.7.10/python-2.7.10.msi
remember to select “Add python.exe to Path”

#### pip & virtualenv (optional)

Linux (Ubuntu/Debian)

sudo apt-get install python-pip python-dev build-essential sudo pip install –upgrade pip sudo pip install –upgrade virtualenv

Windows

With Python 2.7.10 version, pip is a part of the Python for Windows installer.

Windows alternatively: pip can be downloaded with this script: [get-pip.py], and installed by running in console:

C:> python get-pip.py

Requirements

#### Django 1.7-1.8

pip install django

#### Python-PostgreSQL Database Adapter

Linux

pip install psycopg2

Windows

pip install git+https://github.com/nwcell/psycopg2-windows.git@win32-py27#egg=psycopg2

Windows alternatively: download & install from win-psycopg project site - e.g. [psycopg2]

http://stickpeople.com/projects/python/win-psycopg/

Setup

#### outside Django project, in python scripts:

  • set database connection details in mips.dbsettings_default.py

  • set the DJANGO_SETTINGS_MODULE environment variable to “mips.settings”

    import os os.environ.setdefault(“DJANGO_SETTINGS_MODULE”, “mips.settings”)

  • set up Django: django.setup()

    import django django.setup()

Project details


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