Metabolomics Organisation with Galaxy and ISA
Project description
=====
django-mogi
=====
|Build Status (Travis)| |Py versions|
Metabolomics organisation with Galaxy and ISA
Further documentation available on `ReadTheDocs <https://mogi.readthedocs.io/en/latest/>`__
Quick start
-----------
1. Add "mogi" and django application dependencies to your INSTALLED_APPS setting like this (mogi should come before gfiles, galaxy, mbrowse and misa)::
INSTALLED_APPS = [
...
'mogi',
'misa',
'mbrowse',
'galaxy',
'gfiles',
'django_tables2',
'django_tables2_column_shifter',
'django_filters',
'bootstrap3',
'django_sb_admin',
'dal',
'dal_select2',
]
2. Include the URLconf in your project urls.py like this::
url(r'^', include('gfiles.urls')),
url('mogi/', include('mogi.urls')),
url('mbrowse/', include('mbrowse.urls')),
url('misa/', include('misa.urls')),
url('galaxy/', include('galaxy.urls')),
3. Run `python manage.py migrate` to create the mogi models.
4. Start the development server and visit http://127.0.0.1:8000/
5. Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/
6. General overview http://127.0.0.1:8000
7. Create, edit, view and export ISA projects http://127.0.0.1:8000/misa/ilist/
8. Upload to Galaxy, run Galaxy workflows and view Galaxy histories http://127.0.0.1:8000/misa/ilist/
9. Browse, view and search metabolomic datasets http://127.0.0.1:8000/mbrowse/general_summary/
.. |Build Status (Travis)| image:: https://travis-ci.com/computational-metabolomics/django-mogi.svg?branch=master
:target: https://travis-ci.com/computational-metabolomics/django-mogi/
.. |Py versions| image:: https://img.shields.io/pypi/pyversions/django-mogi.svg?style=flat&maxAge=3600
:target: https://pypi.python.org/pypi/django-mogi/
django-mogi
=====
|Build Status (Travis)| |Py versions|
Metabolomics organisation with Galaxy and ISA
Further documentation available on `ReadTheDocs <https://mogi.readthedocs.io/en/latest/>`__
Quick start
-----------
1. Add "mogi" and django application dependencies to your INSTALLED_APPS setting like this (mogi should come before gfiles, galaxy, mbrowse and misa)::
INSTALLED_APPS = [
...
'mogi',
'misa',
'mbrowse',
'galaxy',
'gfiles',
'django_tables2',
'django_tables2_column_shifter',
'django_filters',
'bootstrap3',
'django_sb_admin',
'dal',
'dal_select2',
]
2. Include the URLconf in your project urls.py like this::
url(r'^', include('gfiles.urls')),
url('mogi/', include('mogi.urls')),
url('mbrowse/', include('mbrowse.urls')),
url('misa/', include('misa.urls')),
url('galaxy/', include('galaxy.urls')),
3. Run `python manage.py migrate` to create the mogi models.
4. Start the development server and visit http://127.0.0.1:8000/
5. Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/
6. General overview http://127.0.0.1:8000
7. Create, edit, view and export ISA projects http://127.0.0.1:8000/misa/ilist/
8. Upload to Galaxy, run Galaxy workflows and view Galaxy histories http://127.0.0.1:8000/misa/ilist/
9. Browse, view and search metabolomic datasets http://127.0.0.1:8000/mbrowse/general_summary/
.. |Build Status (Travis)| image:: https://travis-ci.com/computational-metabolomics/django-mogi.svg?branch=master
:target: https://travis-ci.com/computational-metabolomics/django-mogi/
.. |Py versions| image:: https://img.shields.io/pypi/pyversions/django-mogi.svg?style=flat&maxAge=3600
:target: https://pypi.python.org/pypi/django-mogi/
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