dsr-data-tools 1.4.0

Generic data handling utilities including data splitting and analysis.

dsr-data-tools

Data analysis and exploration tools for exploratory data analysis (EDA).

Version 1.4.0: This release matures the Recommendation Engine into an Audit-Aware Framework. It introduces deterministic object hashing for data lineage and a metadata-driven discovery system for "Human-in-the-Loop" configuration.

Features

• Dataset Analysis: Comprehensive statistical summaries and data quality assessment.
• Data Exploration: Tools for understanding data distributions, correlations, and patterns.
• Quality Metrics: Missing value detection, data type analysis, and anomaly identification.
• Statistically Guided Feature Interactions: Automatic discovery of meaningful feature interactions using Mutual Information and Pearson Correlation.
• Recommendation Engine: Intelligent pipeline for Boolean mapping, Numerical casting, and Datetime standardization with customizable execution priority.
• User-Guided ColumnHints: Explicitly guide the engine with metadata for financial, geospatial, or temporal data to override automated heuristics.
• Intelligent Boolean Mapping: Detects and standardizes diverse truthiness indicators (e.g., "Y/N", "Active/Inactive", "1/0") into proper boolean types.
• Cyclic Feature Extraction: Decomposes datetimes into periodic Sine/Cosine features to preserve temporal relationships for machine learning.
• Numerical Precision Optimization: Standardize decimal depth using configurable rounding modes (Nearest, Bankers, Up, Down).
• Audit Lineage & Integrity: Generate deterministic fingerprints for DataFrames and Python objects using joblib-based memory buffer inspection.
• Metadata-Driven Customization: Use class-level metadata to define "editable" fields, enabling seamless integration with YAML-based orchestration.
• Memory-Efficient File Hashing: Chunked SHA-256 validation for raw data files, ensuring integrity on memory-constrained systems.

Installation

pip install dsr-data-tools
pip install dsr-data-tools

Usage

import pandas as pd
from dsr_data_tools import analyze_dataset

# Load your data
df = pd.read_csv('data.csv')

# Perform comprehensive analysis
analyze_dataset(df)

Datetime Conversion Recommendation

generate_recommendations() detects object/string columns that are likely datetimes and recommends converting them to a proper datetime dtype.

import pandas as pd
from dsr_data_tools.analysis import generate_recommendations
from dsr_data_tools.recommendations import apply_recommendations

# Example column with mostly valid date strings
df = pd.DataFrame({
 'date_str': [
  '2025-01-01', '2025-01-02', '2025-01-03',
  '2025-01-04', 'invalid',  # one invalid value
 ] * 10  # scale up rows
})

recs = generate_recommendations(df)

# If detected, apply the datetime conversion recommendation
if 'date_str' in recs and 'datetime_conversion' in recs['date_str']:
 df_converted = apply_recommendations(df, {
  'date_str': recs['date_str']['datetime_conversion']
 })
 # Column is now datetime64; invalid entries coerced to NaT
 print(df_converted['date_str'].dtype)  # datetime64[ns]

Boolean Classification

# The engine now handles semantic mapping, recognizing 'Y' as True
# based on common indicators rather than just alphabetical order
from dsr_data_tools.recommendations import BooleanClassificationRecommendation

df = pd.DataFrame({"active": ["Y", "N", "Y"]})
rec = BooleanClassificationRecommendation(
    column_name="active",
    description="Convert to bool",
    values=["Y", "N"]
)

# Returns [True, False, True]
df_bool = rec.apply(df)

Date Durations

Calculate the numeric duration between two datetime columns in specific units such as 'seconds', 'minutes', 'hours', or 'days'.

from dsr_data_tools.recommendations import DatetimeDurationRecommendation

rec = DatetimeDurationRecommendation(
    start_column="order_date",
    end_column="delivery_date",
    output_column="days_to_deliver",
    unit="days"
)

df = rec.apply(df)

Interactive Missing Value handling

The engine allows choosing between statistical imputation (mean/median/mode), constant filling, or row/column removal.

from dataclasses import fields

# Discover which fields are whitelisted for user edits in your pipeline
editable_fields = [
    f.name for f in fields(rec) 
    if f.metadata.get("editable", False)
]
# Returns: ['strategy', 'fill_value', 'notes', 'enabled', 'alias']

Guided Recommendations with ColumnHints

Users can provide a ColumnHint to specify the 'logical type' of a column and set constraints like rounding, bounds, or specific feature extraction needs.

import pandas as pd
from dsr_data_tools.analysis import RecommendationManager
from dsr_data_tools.recommendations import ColumnHint, RoundingMode

# Load data
df = pd.read_csv('data.csv')

# Define explicit hints to override or guide the engine
hints = {
    "unit_price": ColumnHint.financial(decimal_places=2, rounding_mode=RoundingMode.BANKERS),
    "user_id": ColumnHint.numeric(convert_to_int=True),
    "internal_notes": ColumnHint.ignore()
}

manager = RecommendationManager()
manager.generate_recommendations(df, hints=hints)

# Display the recommended pipeline
for rec in manager._pipeline:
    rec.info()

Data Integrity & Hashing

from dsr_data_tools.hashing import calculate_object_hash, calculate_file_hash
from pathlib import Path

# Generate a deterministic fingerprint of a DataFrame for audit tracking
df_hash = calculate_object_hash(df)
print(f"DataFrame Signature: {df_hash}")

# Verify raw data integrity before ingestion
file_path = Path("data/raw/adult.csv")
file_hash = calculate_file_hash(file_path)

Performance

This library is optimized for large-scale data processing using vectorized operations.

• Vectorized Integer Checks: Optimized from $O(N)$ Python-level application to vectorized modulo operations, resulting in a 5-6× speed increase.
• Cached Data Scans: Common operations like dropna() and unique() are cached to minimize redundant data scans across wide datasets.
• Efficient Scaling: Outlier handling and scaling utilize NumPy vectorized operations and Scikit-Learn transformers for high throughput.

Benchmarks

A benchmark script compares per-element apply(is_integer) against a vectorized modulo check. On large series, the vectorized approach is typically 5–6× faster.

• Script: scripts/benchmark_integer_checks.py

python scripts/benchmark_integer_checks.py           # default size (2,000,000)
python scripts/benchmark_integer_checks.py 5000000  # custom size

Or via Makefile target:

make benchmark                # default N=2,000,000
make benchmark N=5000000      # custom size

Requirements

• Python >= 3.10
• dsr-utils >= 1.4.0
• joblib >= 1.4.0
• numpy >= 2.4.4
• pandas >= 3.0.2
• scikit-learn >= 1.8.0

License

MIT License - see LICENSE file for details