easyfinemap
A flexible framework for GWAS fine-mapping
- Documentation: https://Jianhua-Wang.github.io/easyfinemap
- GitHub: https://github.com/Jianhua-Wang/easyfinemap
- PyPI: https://pypi.org/project/easyfinemap/
- License: MIT
Features
- Formatting of summary statistics using smunger.
- Fast extraction of summary statistics for fine-mapping using tabix/bgzip.
- Checking and formatting of LD reference.
- Representation of variants using Unique SNP ID.
- Support for identifying independent loci using three methods: distance, LD clumping, and conditional analysis.
- Fine-mapping without the need for LD reference.
- Support for four LD-based fine-mapping tools and function-based fine-mapping.
- Fine-mapping combined with conditional analysis.
1 maintainer
Metadata
1 maintainer
Release files for easyfinemap 0.4.7
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| easyfinemap-0.4.7.tar.gz | 33.7 MB | Without provenance | Details for easyfinemap-0.4.7.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| easyfinemap-0.4.7-py3-none-any.whl | Python 3 | none | any | Details for easyfinemap-0.4.7-py3-none-any.whl |
Total release size: 33.7 MB
Release files / easyfinemap-0.4.7.tar.gz
| Download URL | easyfinemap-0.4.7.tar.gz |
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| Size | 33.7 MB |
| Tags | Source |
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Release files / easyfinemap-0.4.7-py3-none-any.whl
| Download URL | easyfinemap-0.4.7-py3-none-any.whl |
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| Tags | Python 3 |
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