eeg_preprocessing_cst 0.1.0

Preprocessing pipeline for the CST dataset at Nathan Kline Institute

CST EEG Preprocessing pipeline

This repository hosts the code for preprocessing EEG data during a CST at Nathan Kline Institute.

eeg_cst_preprocessing

Installation

Install this package via :

pip install eeg_preprocessing_cst

Or get the newest development version via:

pip install git+https://github.com/childmindresearch/eeg_preprocessing_cst

Quick start

The pipeline can be called with the following code:

from eeg_preprocessing_cst.pipeline import CSTpreprocessing as preprocess

Then you just have to create the object and provide the EEG filename and the events filename (in .csv format) as follow:

preprocess = preprocess(EEG_filename, events_filename)

Then, to prepare you raw data for processing you run the following code:

preprocess.set_annotations_to_raw().set_montage()

Finally you can run the different cleaning pipelines (careful it can take a very long time):

preprocess.run_prep()
preprocess.run_asr()

Links or References

TODO

add pyprep and asr