emodpy-malaria

The Python interface for running EMOD malaria simulations.

mosquito

license

Description

emodpy-malaria is the primary way to work with EMOD for malaria research. Use it to set up transmission settings, define populations, and evaluate the impact of interventions such as insecticide-treated nets, indoor residual spraying, treatment seeking, and vaccines — then run simulations and analyze the results.

Project status

EMOD-Hub projects are provided as open source software under the MIT License for community use, research, and development.

Unless otherwise noted, these projects are no longer actively maintained or supported by IDM or the Gates Foundation.

Community contributions are welcome, and trusted collaborators may review and merge pull requests, but no guarantees are made regarding support, pull request review, security response, maintenance, or release timelines.

Try it now

No installation required. Open the repository in GitHub Codespaces, wait for the environment to build, then run:

cd tutorials
python tutorial_1_intro.py

See the tutorial setup page for Codespaces and local installation instructions, and Tutorial 1 for a walkthrough of what the script does.

Installation

pip install emodpy-malaria

For complete installation instructions, including Codespaces, container-based workflows, and local environment setup, see:

https://emod.idmod.org/emodpy-malaria/installation/

For developers, see the developer installation instructions.

Upgrading from 5.x

Version 6.0 is a major overhaul of emodpy-malaria. Import paths, API patterns, and the dependency stack have all changed significantly. Projects using emodpy-malaria 5.x or earlier will require substantial restructuring to work with 6.x.

Migration guide — step-by-step upgrade instructions with before/after code examples
Changelog — complete inventory of every file, module, and API change

Documentation

Full documentation: https://emod.idmod.org/emodpy-malaria

Releases and changelog: https://github.com/EMOD-Hub/emodpy-malaria/releases

Community

Have a question or a comment? Check out our Discussions space.

Contributing

If you have feature requests, issues, or new code, please see our CONTRIBUTING page for how to provide your feedback.

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Source Distribution

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Provenance

The following attestation bundles were made for emodpy_malaria-6.0.5.tar.gz:

Publisher: publish_pypi.yml on EMOD-Hub/emodpy-malaria

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Statement:
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- Predicate type: https://docs.pypi.org/attestations/publish/v1
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- Sigstore integration time: Aug 10, 2026
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- Permalink: EMOD-Hub/emodpy-malaria@a298b0133e2ee2e867e7f2afa095a94621ad0c8b
- Branch / Tag: refs/heads/main
- Owner: https://github.com/EMOD-Hub
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