emodpy-malaria

The Python interface for running EMOD malaria simulations.

mosquito

license

Description

emodpy-malaria is the primary way to work with EMOD for malaria research. Use it to set up transmission settings, define populations, and evaluate the impact of interventions such as insecticide-treated nets, indoor residual spraying, treatment seeking, and vaccines — then run simulations and analyze the results.

Project status

EMOD-Hub projects are provided as open source software under the MIT License for community use, research, and development.

Unless otherwise noted, these projects are no longer actively maintained or supported by IDM or the Gates Foundation.

Community contributions are welcome, and trusted collaborators may review and merge pull requests, but no guarantees are made regarding support, pull request review, security response, maintenance, or release timelines.

Try it now

No installation required. Open the repository in GitHub Codespaces, wait for the environment to build, then run:

cd tutorials
python tutorial_1_intro.py

See the tutorial setup page for Codespaces and local installation instructions, and Tutorial 1 for a walkthrough of what the script does.

Installation

pip install emodpy-malaria

For complete installation instructions, including Codespaces, container-based workflows, and local environment setup, see:

https://emod.idmod.org/emodpy-malaria/installation/

For developers, see the developer installation instructions.

Upgrading from 5.x

Version 6.0 is a major overhaul of emodpy-malaria. Import paths, API patterns, and the dependency stack have all changed significantly. Projects using emodpy-malaria 5.x or earlier will require substantial restructuring to work with 6.x.

  • Migration guide — step-by-step upgrade instructions with before/after code examples
  • Changelog — complete inventory of every file, module, and API change

Documentation

Full documentation: https://emod.idmod.org/emodpy-malaria

Releases and changelog: https://github.com/EMOD-Hub/emodpy-malaria/releases

Community

Have a question or a comment? Check out our Discussions space.

Contributing

If you have feature requests, issues, or new code, please see our CONTRIBUTING page for how to provide your feedback.

Project links

Data verified by PyPI on Jul 11, 2026
Data provided by the project maintainers, verified at the time the release was uploaded to PyPI.

Key dates

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  • Released:
Newer release available (6.0.5)

Owner

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4 maintainers

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Avatar for dbridenbecker from gravatar.com dbridenbecker Avatar for mesokurtic from gravatar.com mesokurtic Avatar for svetova from gravatar.com svetova
+1 more Avatar for yechen-idm from gravatar.com yechen-idm

Credits

Author: Sharon Chen

GitHub Statistics

Data verified by PyPI on Jul 11, 2026
The GitHub source repository was provided by the project maintainers and verified by PyPI at the time of upload. Stars, forks, and open issues/PRs are derived from that repository and have not been independently verified.

License expression

MIT
View SPDX License List

Requires

Python >=3.11

Provides Extra

docs lint test

Tags

modeling IDM

Classifiers

Report project as malware

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