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Epigenomics Single-Cell Analysis in Python.

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EpiScanpy – Epigenomics single cell analysis in python

EpiScanpy is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. EpiScanpy is the epigenomic extension of the very popular scRNA-seq analysis tool Scanpy (Genome Biology, 2018) [Wolf18]. For more information, read scanpy documentation.

The documentation for epiScanpy is available here. If epiScanpy is useful to your research, consider citing epiScanpy.

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