Exdyn
Exdyn is intended to analyze colocalization relation ships between single cell transcriptomes, integrating them with spatial transcriptome.
Instalation
You can install exdyn using pip command from your shell.
pip install exdyn torchtext==0.6.0
Usage
You need to prepare AnnData objects which includes spliced and unspliced transcript counts for single cell transcriptome respectively. You can see the usage in IPython Notebook1 and IPython Notebook2.
1 maintainer
Metadata
1 maintainer
Release files for exdyn 0.0.2
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| exdyn-0.0.2.tar.gz | 43.0 kB | Without provenance | Details for exdyn-0.0.2.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| exdyn-0.0.2-py3-none-any.whl | Python 3 | none | any | Details for exdyn-0.0.2-py3-none-any.whl |
Total release size: 88.2 kB
Release files / exdyn-0.0.2.tar.gz
| Download URL | exdyn-0.0.2.tar.gz |
|---|---|
| Size | 43.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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No |
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twine/5.0.0 CPython/3.9.18
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Release files / exdyn-0.0.2-py3-none-any.whl
| Download URL | exdyn-0.0.2-py3-none-any.whl |
|---|---|
| Size | 45.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.9.18
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Security for exdyn 0.0.2
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