Analyze cell state dynamics dependent on extrinsic factors
Project description
Exdyn
Exdyn is intended to analyze colocalization relation ships between single cell transcriptomes, integrating them with spatial transcriptome.
Instalation
You can install exdyn using pip command from your shell.
pip install exdyn torchtext==0.6.0
Usage
You need to prepare AnnData objects which includes spliced and unspliced transcript counts for single cell transcriptome respectively. You can see the usage in IPython Notebook1 and IPython Notebook2.
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