n-dimensional array viewer for cell tracking data in Python
Project description
finn is (not) napari
The motile tracker started as a napari plugin. However, as we developed more advanced features, we found ourselves wanting to adapt the core code of napari, remove features that were not compatible with our applicaton, change layer controls, etc. finn started as a fork of napari, then a complete copy, and now it is an independent repo optimized for displaying cell tracking data.
Many thanks to the napari community for providing an excellent starting point and tons of great feedback and assistance!
napari contributors (2019). napari: a multi-dimensional image viewer for python. doi:10.5281/zenodo.3555620
Installation
finn is not yet on pypi - you must clone and install from source code
git clone git@github.com:funkelab/finn.git
cd finn
conda create -n finn python=3.10
conda activate finn
pip install '.[all]'
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