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Project description
FiTree
FiTree is a Python package for Bayesian inference of fitness landscapes via tree-structured branching processes.
Installation
pip install fitree
Getting started
FiTree takes tumor mutation trees as input and learns a matrix representing the fitness effects of individual mutations as well as their pairwise interactions. We provide small examples on how to use FiTree:
For large-scale simulation studies and real data application, we recommend looking into the snakemake workflows.
Preprint
The preprint of the paper is provided here.
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