Provides Fractal tasks for the MD to OME-Zarr conversion of faim-ipa
Project description
fractal-faim-ipa
Provides Fractal tasks for the conversion of Molecular Devices ImageXpress microscope to OME-Zarr.
The conversion based on the faim-ipa library. This repo also contains some of the test data from the faim-ipa library, as well as test data from the ZMB provided by @fstur.
Installation
Install this package as:
pip install fractal-faim-ipa
Adding tasks to Fractal server
You can add these Fractal tasks to a server by using the pypi installation and specifying the task name fractal-faim-ipa
Making releases
- Merge PR into main
- Create a Github release with a new tag
The github workflow will then publish this release to PyPI & create a Github release with the corresponding whl file.
Updating the Fractal manifest
Whenever any input parameters or their docstrings change, run:
fractal-manifest create --package fractal-faim-ipa
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