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Shared tools for parsing&processing SLURM data

Project description

fractal-slurm-tools

PyPI version License

You can run a version of this tool from PyPI or GitHub, either via pipx or uvx.

Examples:

# Latest PyPI release
$ pipx run fractal-slurm-tools
$ uvx fractal-slurm-tools

# Specific PyPI release
$ pipx run fractal-slurm-tools==0.0.3
$ uvx fractal-slurm-tools==0.0.3

# Latest GitHub commit
$ pipx run --spec git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git fractal-slurm-tools

# Specific GitHub commit
$ pipx run --spec git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git@3faeefd0eac0f53c6c73d2e3179b10ff2a111793 fractal-slurm-tools

# Specific GitHub branch
$ pipx run --spec git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git@main fractal-slurm-tools

Development

$ python -m venv venv
$ source venv/bin/activate
$ python -m pip install -e .[dev]
[...]
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit

# Run mypi
$ python -m mypy ./src

# Make a release
$ bumpver update --patch --dry

Contributors and license

Fractal was conceived in the Liberali Lab at the Friedrich Miescher Institute for Biomedical Research and in the Pelkmans Lab at the University of Zurich by @jluethi and @gusqgm. The Fractal project is now developed at the BioVisionCenter at the University of Zurich and the project lead is with @jluethi. The core development is done under contract by eXact lab S.r.l..

Unless otherwise specified, Fractal components are released under the BSD 3-Clause License, and copyright is with the BioVisionCenter at the University of Zurich.

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