fractal-slurm-tools 0.3.1a1

Shared tools for parsing&processing SLURM data

fractal-slurm-tools

You can run a version of this tool from PyPI or GitHub, either via pipx or uvx.

Examples (the CLI entrypoint must be one of fractal-slurm-aggregate fractal-slurm-parse-bulk or fractal-slurm-parse-single-job):

# Latest PyPI release
$ pipx run --spec fractal-slurm-tools <entrypoint>
$ uvx --from fractal-slurm-tools <entrypoint>

# Specific PyPI release
$ pipx run --spec fractal-slurm-tools==0.1.0 <entrypoint>
$ uvx --from fractal-slurm-tools==0.1.0 <entrypoint>

# Latest git commit on the default branch
$ pipx run --spec git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git <entrypoint>
$ uvx --from git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git <entrypoint>

# Specific git commit
$ pipx run --spec git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git@3faeefd0eac0f53c6c73d2e3179b10ff2a111793 <entrypoint>
$ uvx --from git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git@3faeefd0eac0f53c6c73d2e3179b10ff2a111793 <entrypoint>

# Specific git branch
$ pipx run --spec git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git@main <entrypoint>
$ uvx --from git+https://github.com/fractal-analytics-platform/fractal-slurm-tools.git@main <entrypoint>

A useful sacct command

sacct --format='JobID%18,JobName%18,State,ReqMem,MaxRSS,AveRSS,Elapsed,NCPUS,CPUTimeRaw,MaxDiskRead,MaxDiskWrite' -j XXXX

Development

$ python -m venv venv
$ source venv/bin/activate
$ python -m pip install -e .[dev]
[...]
$ pre-commit install
pre-commit installed at .git/hooks/pre-commit

# Run mypi
$ python -m mypy ./src

# Make a release
$ bumpver update --patch --dry

Contributors and license

The Fractal project is developed by the BioVisionCenter at the University of Zurich, who contracts eXact lab s.r.l. for software engineering and development support.

Unless otherwise specified, Fractal components are released under the BSD 3-Clause License, and copyright is with the BioVisionCenter at the University of Zurich.