functional-connectivity implements a set of tools to detect and sense changes in a functional network from spike counts
This is the software repository behind the paper:
- Tzu-Chi Yen and Yi-Yun Ho, Mapping functional neuronal networks to behavioral states, in preparation (2024).
Read it on: arXiv.
- For full documentation, please visit this site.
- For general Q&A, ideas, or other things, please visit Discussions.
- For software-related bugs, issues, or suggestions, please use Issues.
Installation
functional-connectivity is available on PyPI:
pip install functional-connectivity
The dependencies needed to interact with Dandi are not installed by default. You will need to run:
pip install --ignore-installed --no-binary=h5py h5py scipy numba
Development
Remember that ./docs contains the documentation of this library.
You would need AWS credentials to be able to execute ./docs/deploy.sh.
Acknowledgement
The functional-connectivity library is supported by The Kavli Foundation. TCY wants to thank Rebecca Morrison (@rebeccaem) and Stephen Becker (@stephenbeckr) for inspirations.
We also want to thank the authors in these software implementations:
- cvxgrp/strat_models
- GalSha/GLASSO_Framework: arXiv (2023)
- tpetaja1/tvgl: KDD (2017), time-varying GGM using ADMM and Python 2.7.
License
functional-connectivity is open-source and licensed under the GNU Lesser General Public License v3.0.
1 maintainer
Metadata
1 maintainer
Release files for functional-connectivity 0.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| functional-connectivity-0.1.3.tar.gz | 2.8 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| functional_connectivity-0.1.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 2.8 MB
Release files / functional-connectivity-0.1.3.tar.gz
| Download URL | functional-connectivity-0.1.3.tar.gz |
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| Size | 2.8 MB |
| Tags | Source |
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Release files / functional_connectivity-0.1.3-py3-none-any.whl
| Download URL | functional_connectivity-0.1.3-py3-none-any.whl |
|---|---|
| Size | 31.2 kB |
| Tags | Python 3 |
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No |
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twine/4.0.2 CPython/3.11.7
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