galaxy-sequence-utils 1.1.5

Galaxy utilities for manipulating sequences Galaxy project.

Galaxy sequence_utils

Galaxy’s sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.

This package is distributed via PyPI and bioconda.

A Galaxy tool can use it by adding a requirement for galaxy_sequence_utils.

History

1.1.5 (2020-02-18)

• Fix fastqreader file handling and CI tests Pull Request 27

1.1.4 (2020-02-07)

• Drop support for Python < 3.5 Pull Request 24, Pull Request 25

• Prevent StopIteration from raising RuntimeError Pull Request 20

• Add fastqReader tests+test data; refactor; modify Pull Request 22

• Fix inconsistent identifier option for fastq_groomer Pull Request 23

1.1.3 (2018-07-06)

• Cope with default format=None in fastaWriter and fastqWriter Pull Request 16

1.1.2 (2017-10-05)

• Do not open compressed file twice in fastqNamedReader class Pull Request 15

1.1.1 (2017-09-19)

• Fix fastq_filter.py , fastq_masker_by_quality.py , fastq_stats.py and fastq_to_fasta.py wrapper scripts Pull Request 14

• Fix fastq_filter.py wrapper script Pull Request 13

1.1.0 (2017-02-13)

• Support gz and bzip2 compressed files. Pull Request 11

• Move wrapper scripts for Galaxy tools into this project and install as part of setup.py . Pull Request 11

1.0.2 (2017-02-02)

• Apply common galaxyproject template to Python structure. 5e9bfc0

• Merge in PEP-8 and Python 3 fixes from the core Galaxy project thanks to @nsoranzo. Pull Request 4

• Implement project testings. a9b907c

• First release published to PyPI.

1.0.1 (2015-12-10)

• Allow fastqJoiner to accept a string of bases to use between joined pairs. Pull Request 2

1.0.0 (2015-10-30)

• Initial import extracted from Galaxy to build stand-alone dependencies for the tools in the Tool Shed.

• Use setuptools Pull Request 1