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Galaxy utilities for manipulating sequences Galaxy project.

Project description

Galaxy sequence_utils

Planemo on the Python Package Index (PyPI) Build Status

Galaxy’s sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.

This package can be installed into any Galaxy with Tool Shed: https://toolshed.g2.bx.psu.edu/view/devteam/package_galaxy_utils_1_0

Galaxy package itself is being maintained at https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_galaxy_utils_1_0

History

1.1.3 (2018-07-06)

  • Cope with default format=None in fastaWriter and fastqWriter Pull Request 16

1.1.2 (2017-10-05)

  • Do not open compressed file twice in fastqNamedReader class Pull Request 15

1.1.1 (2017-09-19)

  • Fix fastq_filter.py , fastq_masker_by_quality.py , fastq_stats.py and fastq_to_fasta.py wrapper scripts Pull Request 14
  • Fix fastq_filter.py wrapper script Pull Request 13

1.1.0 (2017-02-13)

  • Support gz and bzip2 compressed files. Pull Request 11
  • Move wrapper scripts for Galaxy tools into this project and install as part of setup.py . Pull Request 11

1.0.2 (2017-02-02)

  • Apply common galaxyproject template to Python structure. 5e9bfc0
  • Merge in PEP-8 and Python 3 fixes from the core Galaxy project thanks to @nsoranzo. Pull Request 4
  • Implement project testings. a9b907c
  • First release published to PyPI.

1.0.1 (2015-12-10)

  • Allow fastqJoiner to accept a string of bases to use between joined pairs. Pull Request 2

1.0.0 (2015-10-30)

  • Initial import extracted from Galaxy to build stand-alone dependencies for the tools in the Tool Shed.
  • Use setuptools Pull Request 1

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