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Overview

The Galaxy testing base package.

History

26.1.0 (2026-08-02)

Bug fixes

  • Fix dbkey filter returning no options when dbkey unset by @jmchilton in #21916

  • Fix workflow implicit mapping of flat collections over paired_or_unpaired by @jmchilton in #21933

  • Fix more paired_or_unpaired collection issues by @jmchilton in #22170

  • Fix mypy and packaging issues; pin rocrate<0.15.0 by @nsoranzo in #22469

  • Honor group-derived roles in unprivileged tool access check by @mvdbeek in #22623

  • Update test workflows to respect gxformat2 0.26.0 syntax by @nsoranzo in #22642

  • Always attempt to build tool request for new API endpoint by @mvdbeek in #22894

Enhancements

  • Show persistent best practice results in workflow editor by @mvdbeek in #19546

  • Add Selenium tests for workflow extraction UI by @jmchilton in #21805

  • Migrate tool execution request from api/tools to api/jobs by @guerler in #21842

  • Support URL and TRS references for subworkflows in workflow import by @mvdbeek in #21887

  • Converge framework workflow test syntax toward Planemo syntax by @jmchilton in #21907

  • Add the History Graph API by @guerler in #21932

  • Migrate Python packages to `src` layout and pure namespace packages by @mr-c in #21977

  • Enrich tool parameter JSON Schema with Galaxy metadata via model methods by @mvdbeek in #22020

  • Replace mocked agent tests with static YAML backend for deterministic API/E2E testing by @jmchilton in #22070

  • Simplify gxformat2 contract - drop ImporterGalaxyInterface, convert_and_import_workflow by @jmchilton in #22241

  • Galaxy Notebooks: Persistent Narrative for Human-AI Collaborative Science in Galaxy by @jmchilton in #22361

  • Server-Sent Events for history + notification updates by @mvdbeek in #22513

  • Tighten the workflow test schema by @jmchilton in #22566

  • Add bulk dataset storage migration by @davelopez in #22606

26.0.1 (2026-06-04)

Bug fixes

26.0.0 (2026-04-08)

Bug fixes

  • Accept 404 as valid intermediate state when waiting for dataset purge by @mvdbeek in #21521

  • Backport paired or unpaired mapping fix by @mvdbeek in #21936

  • Fix HDCA lost in tool form on rerun by @mvdbeek in #22258

  • Fix purge for anon histories by @mvdbeek in #22275

  • Improve timeout and error handling in /api/proxy endpoint by @mvdbeek in #22297

  • Fix HideDatasetAction not applied for cached workflow jobs by @mvdbeek in #22360

Enhancements

Other changes

25.1.2 (2026-03-09)

Bug fixes

  • Add selenium test and fix inline images in workflow report tables by @mvdbeek in #21698

  • Fix tool credentials on containerized (Singularity/Docker) destinations by @arash77 in #21821

25.1.1 (2026-02-03)

Bug fixes

Enhancements

  • Add database operation tool to convert sample sheets to list collections by @mvdbeek in #21625

25.1.0 (2025-12-12)

Bug fixes

Enhancements

Other changes

  • Sample Sheet Bug Fixes around Preserving Collection Metadata by @jmchilton in #20749

25.0.4 (2025-11-18)

Bug fixes

25.0.3 (2025-09-23)

No recorded changes since last release

25.0.2 (2025-08-13)

Bug fixes

25.0.1 (2025-06-20)

No recorded changes since last release

25.0.0 (2025-06-18)

Bug fixes

  • Use resource_path() to access datatypes_conf.xml.sample as a package resource by @nsoranzo in #19331

  • Fix ownership check in history contents update route by @mvdbeek in #19969

  • Add test for workflow instance download fix by @ahmedhamidawan in #20326

Enhancements

  • Calculate hash for new non-deferred datasets when finishing a job by @nsoranzo in #19181

  • Empower Users to Build More Kinds of Collections, More Intelligently by @jmchilton in #19377

  • Add User-Defined Tools by @mvdbeek in #19434

  • Format code with black 25.1.0 by @nsoranzo in #19625

  • Improved simplicity and isolation in transiently failing test. by @jmchilton in #19709

  • Implement dataset collection support in workflow landing requests by @mvdbeek in #20004

24.2.4 (2025-06-17)

Bug fixes

24.2.3 (2025-03-16)

No recorded changes since last release

24.2.2 (2025-03-08)

Enhancements

  • Add bwa_mem2_index directory datatype, framework enhancements for testing directories by @mvdbeek in #19694

24.2.1 (2025-02-28)

No recorded changes since last release

24.2.0 (2025-02-11)

Bug fixes

Enhancements

Other changes

24.1.4 (2024-12-11)

Bug fixes

  • Fix subwofklow tags serialization type by @arash77 in #18456

  • Fix infinitely delayed workflow scheduling if skipped step creates HDCA by @mvdbeek in #18751

  • Fix wrong extension on pick data output by @mvdbeek in #18798

  • Fix data_column ref to nested collection by @mvdbeek in #18875

  • Access tool data table filters in workflow building mode by @mvdbeek in #18900

24.1.3 (2024-10-25)

Bug fixes

  • Fix subwofklow tags serialization type by @arash77 in #18456

  • Fix infinitely delayed workflow scheduling if skipped step creates HDCA by @mvdbeek in #18751

  • Fix wrong extension on pick data output by @mvdbeek in #18798

  • Fix data_column ref to nested collection by @mvdbeek in #18875

  • Access tool data table filters in workflow building mode by @mvdbeek in #18900

24.1.2 (2024-09-25)

Bug fixes

  • Fix infinitely delayed workflow scheduling if skipped step creates HDCA by @mvdbeek in #18751

  • Fix wrong extension on pick data output by @mvdbeek in #18798

  • Fix data_column ref to nested collection by @mvdbeek in #18875

24.1.1 (2024-07-02)

Bug fixes

Enhancements

24.0.3 (2024-06-28)

Bug fixes

  • Fix submitted value in workflow run form if data is constrained by tag filter by @mvdbeek in #18193

24.0.2 (2024-05-07)

No recorded changes since last release

24.0.1 (2024-05-02)

Bug fixes

  • Make wait_for_history_jobs look at jobs, not datasets by @mvdbeek in #17892

  • Fix missing implicit conversion for mapped over jobs by @mvdbeek in #17952

24.0.0 (2024-04-02)

Enhancements

23.2.1 (2024-02-21)

Bug fixes

Enhancements

  • Implement default locations for data and collection parameters. by @jmchilton in #14955

  • Delete non-terminal jobs and subworkflow invocations when cancelling invocation by @mvdbeek in #16252

  • Augment pgcleanup to allow periodically deleting old datasets. by @jmchilton in #16340

  • Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by @ahmedhamidawan in #16739

  • Change api/tool_panel to api/tool_panels/… by @ahmedhamidawan in #16928

23.1.4 (2024-01-04)

No recorded changes since last release

23.1.3 (2023-12-01)

No recorded changes since last release

23.1.2 (2023-11-29)

Bug fixes

  • Fix duplicated tools in tool panel view section copying by @jmchilton in #17036

23.1.1 (2023-10-23)

Bug fixes

  • Ensure session is request-scoped for legacy endpoints by @jdavcs in #16207

Enhancements

Other changes

23.0.6 (2023-10-23)

No recorded changes since last release

23.0.5 (2023-07-29)

No recorded changes since last release

23.0.4 (2023-06-30)

No recorded changes since last release

23.0.3 (2023-06-26)

No recorded changes since last release

23.0.2 (2023-06-13)

No recorded changes since last release

23.0.1 (2023-06-08)

Bug fixes

20.9.0 (2020-10-15)

  • Initial release from the 20.09 branch of Galaxy.

20.5.0 (2020-07-04)

  • Initial import from the 20.05 branch of Galaxy.

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