The Gencove CLI
What is Gencove?
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
Main Features
It is most often used for:
- Uploading FASTQ files for analysis
- Downloading analysis results which include the following:
- Sequence (
.fastq.gz) - Alignment (
.bam,.bai) - Imputation (
.vcf.gz,.vcf.gz.tbi,.vcf.gz.csi)
- Sequence (
- Assigning metadata to Gencove samples
Before filing a bug report, please refer to the following link. Bugs should be reported here.
Installation
# install via PyPI
pip install gencove
# updating to latest version
pip install -U gencove
Documentation
Online documentation (with examples) is available at docs.gencove.com
API reference for publicly available endpoints: API Reference
Comprehensive CLI Documentation available: CLI Reference
1 maintainer
Metadata
1 maintainer
Release files for gencove 4.4.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| gencove-4.4.0.tar.gz | 175.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| gencove-4.4.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 508.5 kB
Release files / gencove-4.4.0.tar.gz
| Download URL | gencove-4.4.0.tar.gz |
|---|---|
| Size | 175.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
da92ccae134d404773231ee90b6a6fe833b3a77d4b2f7260b6e768c893f4fc8e
|
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BLAKE2b-256 checksum How to use checksums |
63503442a606b4fe4929b1a128f21811d71f163cb1448aa7ecb2279afc7da3ec
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.9.30 {"installer":{"name":"uv","version":"0.9.30","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Debian GNU/Linux","version":"12","id":"bookworm","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
Release files / gencove-4.4.0-py3-none-any.whl
| Download URL | gencove-4.4.0-py3-none-any.whl |
|---|---|
| Size | 332.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
9d61a3a73543afc73587839f7f79fe717ab5fbd847aab2d6279f51f4a2ccb173
|
|
BLAKE2b-256 checksum How to use checksums |
c699f255b20014256055d0896035180595a2ad072449ed963882a11a16c8dd17
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.9.30 {"installer":{"name":"uv","version":"0.9.30","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"Debian GNU/Linux","version":"12","id":"bookworm","libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":true}
|
