Library to compare DNA sequences (diff, common blocks, etc.)
Project description
GeneBlocks is a Python library to compare DNA sequences. It can be used to:
- Find common blocks in a group of DNA sequences, to factorize them (e.g. only analyze or synthetize each common block once)
- Highlight differences between sequences (insertions, deletions, mutations)
- Transfer Genbank features from one record to another sharing similar subsequences.
At the Edinburgh Genome Foundry, we use GeneBlocks to optimize sequence assembly, explore sets of non-annotated sequences, or visualize the differences between different versions of a sequence, and re-annotate records coming from third parties such as DNA manufacturers.
Infos
PIP installation:
pip install geneblocks
Github Page
https://github.com/Edinburgh-Genome-Foundry/geneblocks
Live demos
Transfer Genbank features between records
License: MIT, Copyright Edinburgh Genome Foundry
More biology software
Geneblocks is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.
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| Filename, size geneblocks-0.5.0.tar.gz (20.2 kB) | File type Source | Python version None | Upload date | Hashes View hashes |
