fast and memory-efficient genomic k-mer calculations
Project description
Introduction
This Python package implements objects and functions that allow for fast and memory-efficient k-mer calculations on the genome. See the genome-kmers homepage for a detailed overview, examples, dev setup, and API reference.
This package can be installed via PyPI
pip install genome-kmers
or via cloning the repo and installing (e.g. using poetry)
git clone git@github.com:mrperkett/genome-kmers.git
cd genome-kmers/
poetry install
# run tests to verify everything is working properly
poetry run python -m pytest
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file genome_kmers-1.0.0.tar.gz.
File metadata
- Download URL: genome_kmers-1.0.0.tar.gz
- Upload date:
- Size: 33.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.10.12 Linux/5.15.153.1-microsoft-standard-WSL2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
abc3d27d0cdfbecabcbcf3a8be2470317e5cbd29b4d0f207bf839eda91260a41
|
|
| MD5 |
b5b7ba90846f9739408ff41cadc8a69e
|
|
| BLAKE2b-256 |
094020dbe2ec6a5797e3872ee64c22fba25e7151d1b93e85ac09109c64c7d164
|
File details
Details for the file genome_kmers-1.0.0-py3-none-any.whl.
File metadata
- Download URL: genome_kmers-1.0.0-py3-none-any.whl
- Upload date:
- Size: 34.7 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.10.12 Linux/5.15.153.1-microsoft-standard-WSL2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
686b7507a383e87f32e4d6ecb7848757f069ea01782cc0c6d3391589c98bc287
|
|
| MD5 |
36b6ede7b905afeff90203595d7c387e
|
|
| BLAKE2b-256 |
f440f2f3611e208c9276b8da6808250008cd4d6a4bc73271d095014b77d9a064
|
